Why It Is Done

Stool analysis is done to:

• Help identify diseases of the digestive tract, liver, and pancreas. Certain enzymes (such as trypsin or elastase) may be evaluated in the stool to help determine how well the pancreas is functioning.
• Help find the cause of symptoms affecting the digestive tract, including prolonged diarrhea, bloody diarrhea, an increased amount of gas, nausea, vomiting, loss of appetite, bloating, abdominal pain and cramping, and fever.
• Screen for colon cancer by checking for hidden (occult) blood.
• Look for parasites, such as pinworms or Giardia.
• Look for the cause of an infection, such as bacteria, a fungus, or a virus.
• Check for poor absorption of nutrients by the digestive tract (malabsorption syndrome). For this test, all stool is collected over a 72-hour period and then checked for fat (and sometimes for meat fibers). This test is called a 72-hour stool collection or quantitative fecal fat test.

Talk to your doctor about any concerns you have regarding the need for the test, its risks, how it will be done, or what the results will mean. To help you understand the importance of this test, fill out the medical test information form( What is a PDF document? ).

How To Prepare

Many medicines can change the results of this test. You will need to avoid certain medicines depending on which kind of stool analysis you have. You may need to stop taking medicines such as antacids, antidiarrheal medicines, antiparasite medicines, antibiotics, laxatives, or nonsteroidal anti-inflammatory drugs (NSAIDs) for 1 to 2 weeks before you have the test. Be sure to tell your doctor about all the nonprescription and prescription medicines you take.

Be sure to tell your doctor if you have:

• Recently had an X-ray test using barium contrast material, such as a barium enema or upper gastrointestinal series (barium swallow). Barium can interfere with test results.
• Traveled in recent weeks or months, especially if you have traveled outside the country. This helps your doctor look for the parasites, fungi, viruses, or bacteria that may be causing a problem.

If your stool is being tested for blood, you may need to avoid certain foods for 2 to 3 days before the test. This depends on what kind of stool test you use. And do not do the test during your menstrual period or if you have active bleeding from hemorrhoids. If you aren’t sure about how to prepare, ask your doctor.

Do not use a stool sample for testing that has been in contact with toilet bowl cleaning products that turn the water blue.

How It Is Done

Stool samples can be collected at home, in your doctor’s office, at a medical clinic, or at the hospital. If you collect the samples at home, you will be given stool collection kits to use each day. Each kit contains applicator sticks and two sterile containers.

You may need to collect more than one sample over 1 to 3 days. Follow the same procedure for each day.

Collect the samples as follows:

• Urinate before collecting the stool so that you do not get any urine in the stool sample.
• Put on gloves before handling your stool. Stool can contain germs that spread infection. Wash your hands after you remove your gloves.
• Pass stool (but no urine) into a dry container. You may be given a plastic basin that can be placed under the toilet seat to catch the stool.
  • Either solid or liquid stool can be collected.
  • If you have diarrhea, a large plastic bag taped to the toilet seat may make the collection process easier; the bag is then placed in a plastic container.
  • If you are constipated, you may be given a small enema.
  • Do not collect the sample from the toilet bowl.
  • Do not mix toilet paper, water, or soap with the sample.
• Place the lid on the container and label it with your name, your doctor’s name, and the date the stool was collected. Use one container for each day’s collection, and collect a sample only once a day unless your doctor gives you other directions.

Take the sealed container to your doctor’s office or the laboratory as soon as possible. You may need to deliver your sample to the lab within a certain time. Tell your doctor if you think you may have trouble getting the sample to the lab on time.

If the stool is collected in your doctor’s office or the hospital, you will pass the stool in a plastic container that is inserted under the toilet seat or in a bedpan. A health professional will package the sample for laboratory analysis.

You will need to collect stool for 3 days in a row if the sample is being tested for quantitative fats. You will begin collecting stool on the morning of the first day. The samples are placed in a large container and then refrigerated.

You may need to collect several stool samples over 7 to 10 days if you have digestive symptoms after traveling outside the country.

Samples from babies and young children may be collected from diapers (if the stool is not contaminated with urine) or from a small-diameter glass tube inserted into the baby’s rectum while the baby is held on an adult’s lap.

Sometimes a stool sample is collected using a rectal swab that contains a preservative. The swab is inserted into the rectum, rotated gently, and then withdrawn. It is placed in a clean, dry container and sent to the lab right away.

How It Feels

There is no pain while collecting a stool sample. If you are constipated, straining to pass stool may be painful.

If your health professional uses a rectal swab to collect the sample, you may feel some pressure or discomfort as the swab is inserted into your rectum.

What Affects the Test

Reasons you may not be able to have the test or why the results may not be helpful include:

• Taking medicines such as antibiotics, antidiarrheal medicines, barium, bismuth, iron, ascorbic acid, nonsteroidal anti-inflammatory drugs (NSAIDs), and magnesium.
• Contaminating a stool sample with urine, blood from a menstrual period or a bleeding hemorrhoid, or chemicals found in toilet paper and paper towels.
• Exposing the stool sample to air or room temperature or failing to send the sample to a laboratory within 1 hour of collection.

What To Think About

• Stool may be checked for hidden (occult) blood. To learn more, see the topic Stool Tests for Colorectal Cancer.
• A stool culture is done to find the cause of an infection, such as bacteria, a virus, a fungus, or a parasite. To learn more, see the topic Stool Culture.
• A bowel transit time test is done to help find the cause of abnormal movement of food through the digestive tract. To learn more, see the topic Bowel Transit Time.
• The D-xylose absorption test is done to help diagnose problems that prevent the small intestine from absorbing nutrients in food. This test may be done when symptoms of malabsorption syndrome (such as chronic diarrhea, weight loss, and weakness) are present. To learn more, see the topic D-Xylose Absorption Test.
• A stool analysis to measure trypsin or elastase is not as reliable as the sweat test to detect cystic fibrosis. To learn more, see the topic Sweat Test.